I am doing research about association mapping in plant.
I am having problem to make LD plot using SSR markers with the software TASSEL 2.1 because my material is heterozygous and the genotypes are not phased, so TASSEL 2.1 can’t calculate LD.
I am looking for appropriate software that can calculate LD with my material.
I thank you very much for any help or suggestion.
asked 21 May '12, 16:30
We draw our plots with HaploView or HelixTree (by GoldenHelix).
answered 21 May '12, 16:30