Hi I'm creating a workflow in taverna and I need some type of GO analysis to give me statistics on the significance of my findings. I was recommended that either DAVID or GOrilla would be suitable for my purposes but I cannot find either of them as a web service. Is there any around that I am missing in my searches or should I just stick with manual submissions for now?
I know that there's a question on accessing DAVID programmatically but it's not really what I'm looking for. As you can probably all tell im kind of new to this. Thanks for your time, any help would be appreciated.
asked 21 May '12, 16:34
I believe that Taverna integrates using SOAP and WSDL files. I'm afraid I'm not aware of any enrichment tool that is available via SOAP. Within the GO we maintain a list of tools together with metadata on each:
But we don't explicitly capture details of the API (we'd be happy to include this if provided).
Within the GO we plan to make a wide variety of enrichment tools available via Galaxy. We have a beta version here:
But so far only a few enrichment tools are wrapped.
This isn't much help to you though, unless someone has written of a general purpose Galaxy-to-Taverna bridge, sorry.
answered 21 May '12, 16:36
Did you check this http://www.agbase.msstate.edu/cgi-bin/tools/index.cgi
answered 21 May '12, 16:37